PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29743.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 350aa    MW: 39042.9 Da    PI: 7.621
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29743.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.7e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l+ ++ q+G+g +W + ++++g++R++k+c++rw++yl
       KHN29743.1 14 KGPWSPDEDAKLKSYIDQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding35.62.1e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
       KHN29743.1  69 GGFSEEEDNIICSLYVCIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.356966IPR017930Myb domain
SuperFamilySSF466891.23E-2511109IPR009057Homeodomain-like
SMARTSM007171.5E-111364IPR001005SANT/Myb domain
PfamPF002497.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-241569IPR009057Homeodomain-like
CDDcd001677.82E-91662No hitNo description
SMARTSM007171.4E-967115IPR001005SANT/Myb domain
PROSITE profilePS5129415.20167117IPR017930Myb domain
PfamPF002493.8E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2370117IPR009057Homeodomain-like
CDDcd001671.03E-771111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRAPCCDKS NVKKGPWSPD EDAKLKSYID QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYVCIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
RRKELQARNK GNGVVEHENN SSLLLQENSA QQLHPCWPQI PAVLPLSPYT NQSPSFNDQD  180
SIRKLLIKLG GRFSDDYQRI LDGLNLQFPH GSLSSTQLLQ EEQVHFVSSA GCMNSIGNNQ  240
VQFGQSNEYR AELVQGQSSF TTTTVGEMVS ANDYSQRLLG GSLEFFYGEE MITDKIMGGA  300
CASSSCGQST DWGETSSLIY PPLVASNYEG VRQEMPRECV FQELSYPGAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523636.10.0PREDICTED: transcription factor RAX3-like
SwissprotQ9M2Y96e-90RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A0B2RCY30.0A0A0B2RCY3_GLYSO; Transcription factor RAX3
STRINGGLYMA04G05170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-82myb domain protein 84
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]